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lefty/antivin transforming growth factor beta superfamily signaling ligand [ Ciona intestinalis (vase tunicate) ]

Gene ID: 778973, updated on 21-Dec-2023

Summary

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Gene symbol
lefty/antivin
Gene description
transforming growth factor beta superfamily signaling ligand
See related
Ensembl:ENSCING00000008562
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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Genomic context

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See lefty/antivin in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 3 NC_020168.2 (6288509..6291499, complement)

Chromosome 3 - NC_020168.2Genomic Context describing neighboring genes Neighboring gene probable 28S rRNA (cytosine-C(5))-methyltransferase Neighboring gene protein kinase C alpha type Neighboring gene uncharacterized LOC100181947 Neighboring gene calmodulin-2/4-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020168.2 Chromosome 3 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene expression profiles of transcription factors and signaling molecules in the ascidian embryo: towards a comprehensive understanding of gene networks. Imai KS, et al. Development, 2004 Aug. PMID 15269171
  2. Genomewide surveys of developmentally relevant genes in Ciona intestinalis. Satou Y, et al. Dev Genes Evol, 2003 Jun. PMID 12736827
  3. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables growth factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transforming growth factor beta receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in BMP signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in SMAD protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transforming growth factor beta superfamily signaling ligand

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001078529.1 → NP_001071997.1  transforming growth factor beta superfamily signaling ligand precursor

    See identical proteins and their annotated locations for NP_001071997.1

    Status: PROVISIONAL

    Source sequence(s)
    AB210529
    UniProtKB/TrEMBL
    A0A1W2VPH4, F6X1A2, Q4H393
    Related
    ENSCINP00000017465, ENSCINT00000017465
    Conserved Domains (2) summary
    pfam00019
    Location:297 → 377
    TGF_beta; Transforming growth factor beta like domain
    pfam00688
    Location:106 → 240
    TGFb_propeptide; TGF-beta propeptide

RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020168.2 Reference KH Primary Assembly

    Range
    6288509..6291499 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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