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zf(c2h2)-26 zinc finger protein [ Ciona intestinalis (vase tunicate) ]

Gene ID: 778813, updated on 21-Dec-2023

Summary

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Gene symbol
zf(c2h2)-26
Gene description
zinc finger protein
See related
Ensembl:ENSCING00000001724
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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Genomic context

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See zf(c2h2)-26 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
16
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 3 NC_020168.2 (1465279..1473866)

Chromosome 3 - NC_020168.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104265504 Neighboring gene uncharacterized LOC778738 Neighboring gene uncharacterized protein KIAA0895-like Neighboring gene dynein regulatory complex subunit 3-like Neighboring gene 72 kDa type IV collagenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020168.2 Chromosome 3 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene expression profiles of transcription factors and signaling molecules in the ascidian embryo: towards a comprehensive understanding of gene networks. Imai KS, et al. Development, 2004 Aug. PMID 15269171
  2. Genomewide surveys of developmentally relevant genes in Ciona intestinalis. Satou Y, et al. Dev Genes Evol, 2003 Jun. PMID 12736827
  3. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001078400.1 → NP_001071868.1  zinc finger protein

    See identical proteins and their annotated locations for NP_001071868.1

    Status: PROVISIONAL

    Source sequence(s)
    AB210783
    UniProtKB/TrEMBL
    A0A1W2VNQ6, F6TVE9, Q4H2I9
    Related
    ENSCINP00000003482, ENSCINT00000003482
    Conserved Domains (2) summary
    sd00017
    Location:596 → 616
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:377 → 402
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020168.2 Reference KH Primary Assembly

    Range
    1465279..1473866
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026833562.1 → XP_026689363.1  zinc finger protein isoform X1

    UniProtKB/TrEMBL
    F6TVE9
    Conserved Domains (2) summary
    sd00017
    Location:450 → 470
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:231 → 256
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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