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UTP4 UTP4, small subunit processome component [ Gallus gallus (chicken) ]

Gene ID: 769632, updated on 5-Mar-2024

Summary

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Symbol
UTP4provided by CGNC
Full Name
UTP4, small subunit processome componentprovided by CGNC
Primary source
CGNC:55410
See related
Ensembl:ENSGALG00010008167
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
CIRH1A
Orthologs
human mouse all
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Genomic context

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See UTP4 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
16
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 11 NC_052542.1 (18562005..18566735)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 11 NC_052583.1 (18909994..18914725)

Chromosome 11 - NC_052542.1Genomic Context describing neighboring genes Neighboring gene hyaluronan synthase 3 Neighboring gene chromosome transmission fidelity factor 8 Neighboring gene syntrophin beta 2 Neighboring gene vacuolar protein sorting 4 homolog A Neighboring gene component of oligomeric golgi complex 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of t-UTP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U3 small nucleolar RNA-associated protein 4 homolog; LOW QUALITY PROTEIN: U3 small nucleolar RNA-associated protein 4 homolog
Names
cirrhosis, autosomal recessive 1A (cirhin)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052542.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    18562005..18566735
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001232919.7 → XP_001232920.3  LOW QUALITY PROTEIN: U3 small nucleolar RNA-associated protein 4 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8V0XWI9
    Related
    ENSGALP00010011049.1, ENSGALT00010019501.1
    Conserved Domains (2) summary
    sd00039
    Location:21 → 57
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:16 → 307
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052583.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    18909994..18914725
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040681176.2 → XP_040537110.1  U3 small nucleolar RNA-associated protein 4 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8V0XWI9
    Conserved Domains (2) summary
    sd00039
    Location:21 → 57
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:16 → 307
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_040681177.2 → XP_040537111.1  U3 small nucleolar RNA-associated protein 4 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8V0XWI9
    Conserved Domains (2) summary
    sd00039
    Location:21 → 57
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:16 → 307
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
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