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ctdsplb CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like b [ Danio rerio (zebrafish) ]

Gene ID: 767676, updated on 12-Sep-2024

Summary

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Official Symbol
ctdsplbprovided by ZNC
Official Full Name
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060929-488
See related
Ensembl:ENSDARG00000062116 AllianceGenome:ZFIN:ZDB-GENE-060929-488
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fd18d04; zgc:154102
Summary
Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Orthologous to human CTDSPL (CTD small phosphatase like). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (21356303..21383393)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (21697275..21725331)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene kelch-like family member 40a Neighboring gene hedgehog acyltransferase like, a Neighboring gene microRNA 26a-2 Neighboring gene phospholipase C, delta 1b Neighboring gene uncharacterized LOC108179685 Neighboring gene AFG3-like AAA ATPase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC154102

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA polymerase II CTD heptapeptide repeat phosphatase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II CTD heptapeptide repeat phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables myosin phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like b
NP_001070083.1
XP_005163418.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001076615.1 → NP_001070083.1  CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like b

    See identical proteins and their annotated locations for NP_001070083.1

    Status: PROVISIONAL

    Source sequence(s)
    BC124542
    UniProtKB/TrEMBL
    Q08BV3
    Related
    ENSDARP00000141942.2, ENSDART00000171397.2
    Conserved Domains (2) summary
    COG5190
    Location:69 → 261
    FCP1; TFIIF-interacting CTD phosphatase, includes NLI-interacting factor [Transcription]
    TIGR02251
    Location:96 → 255
    HIF-SF_euk; Dullard-like phosphatase domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    21356303..21383393
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005163361.5 → XP_005163418.1  CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like b isoform X1

    UniProtKB/TrEMBL
    A0A8M2BAS3
    Conserved Domains (2) summary
    COG5190
    Location:93 → 272
    FCP1; TFIIF-interacting CTD phosphatase, includes NLI-interacting factor [Transcription]
    TIGR02251
    Location:107 → 266
    HIF-SF_euk; Dullard-like phosphatase domain
Nucleotide Protein Strain
Heading Accession and Version

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