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zf(c2h2)-36 zinc finger protein 36 [ Ciona intestinalis (vase tunicate) ]

Gene ID: 751567, updated on 21-Dec-2023

Summary

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Gene symbol
zf(c2h2)-36
Gene description
zinc finger protein 36
See related
Ensembl:ENSCING00000008073
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
Also known as
Ci-ZF(C2H2)-36
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Genomic context

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See zf(c2h2)-36 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
21
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 8 NC_020173.2 (1192362..1206918)

Chromosome 8 - NC_020173.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108949716 Neighboring gene uncharacterized LOC100183119 Neighboring gene uncharacterized LOC113474457 Neighboring gene Neuralized-b protein Neighboring gene uncharacterized LOC100183911 Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 Neighboring gene cyclin-Q

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020173.2 Chromosome 8 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Systematic analysis of embryonic expression profiles of zinc finger genes in Ciona intestinalis. Miwata K, et al. Dev Biol, 2006 Apr 15. PMID 16519883
  2. An integrated database of the ascidian, Ciona intestinalis: towards functional genomics. Satou Y, et al. Zoolog Sci, 2005 Aug. PMID 16141696
  3. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 36

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001047994.1 → NP_001041459.1  zinc finger protein 36

    See identical proteins and their annotated locations for NP_001041459.1

    Status: PROVISIONAL

    Source sequence(s)
    BR000044
    UniProtKB/TrEMBL
    A0A1W2VNJ3, Q1RLJ0

RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020173.2 Reference KH Primary Assembly

    Range
    1192362..1206918
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009860883.3 → XP_009859185.1  zinc finger protein 36 isoform X1

    UniProtKB/TrEMBL
    A0A1W3JQ48
    Conserved Domains (2) summary
    cd00063
    Location:743 → 820
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00017
    Location:128 → 149
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_018812710.2 → XP_018668255.1  zinc finger protein 36 isoform X2

    UniProtKB/TrEMBL
    A0A1W5B6Z7

  3. XM_018812711.2 → XP_018668256.1  zinc finger protein 36 isoform X3

    UniProtKB/TrEMBL
    A0A1W5BCY6
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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