RNF39 ring finger protein 39 [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: RNF39provided by VGNC
Official Full Name: ring finger protein 39provided by VGNC
Primary source: VGNC:VGNC:57537
Locus tag: CK820_G0006729
See related: Ensembl:ENSPTRG00000031491
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as: HZFW1
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 6

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	5	NC_072403.2 (35983410..35988080, complement)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	6	NC_072404.1 (35983417..35988087, complement)

Chromosome 5 - NC_072403.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed
enables ubiquitin protein ligase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in protein ubiquitination	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: RING finger protein 39

Names: protein HZFw

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001114168.1 → NP_001107640.1 RING finger protein 39

See identical proteins and their annotated locations for NP_001107640.1

Status: PROVISIONAL

Source sequence(s)

BA000041

UniProtKB/Swiss-Prot

Q1XHV6, Q1XHV9, Q7YR31

UniProtKB/TrEMBL

A0A2J8NX41, A0A2J8NX49, A0A6D2W364, H2RAL2

Related

ENSPTRP00000073690.1, ENSPTRT00000087266.1

Conserved Domains (3) summary

cd12888
Location:229 → 415

SPRY_PRY_TRIM7_like; PRY/SPRY domain in tripartite motif-binding protein 7 (TRIM7)-like, including TRIM7, TRIM10, TRIM15, TRIM26, TRIM39, TRIM41

cl17238
Location:86 → 134

RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

cl28410
Location:63 → 254

RAD18; RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072403.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

35983410..35988080 complement

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GenBank, FASTA, Sequence Viewer (Graphics)