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LOC7484689 myb family transcription factor EFM [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7484689, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7484689
Gene description
myb family transcription factor EFM
Locus tag
POPTR_006G155200v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 6 NC_037290.2 (13942823..13945612)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 6 NC_037290.1 (13963726..13966544)

Chromosome 6 - NC_037290.2Genomic Context describing neighboring genes Neighboring gene EG45-like domain containing protein Neighboring gene 26S proteasome regulatory subunit 8 homolog B Neighboring gene pentatricopeptide repeat-containing protein At5g55740, chloroplastic Neighboring gene strigolactone esterase D14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myb family transcription factor EFM

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037290.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    13942823..13945612
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002308278.4 → XP_002308314.1  myb family transcription factor EFM

    See identical proteins and their annotated locations for XP_002308314.1

    UniProtKB/TrEMBL
    B9H993
    Conserved Domains (2) summary
    TIGR01557
    Location:250 → 306
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    PLN03162
    Location:182 → 307
    PLN03162; golden-2 like transcription factor; Provisional
Nucleotide Protein
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