U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC7461603 zinc finger protein CONSTANS-LIKE 5 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7461603, updated on 23-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC7461603
Gene description
zinc finger protein CONSTANS-LIKE 5
Locus tag
POPTR_018G096084v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 18
Exon count:
2
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 18 NC_037302.2 (11697353..11699174)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) Unplaced Scaffold NW_020167943.1 (90473..92333)

Chromosome 18 - NC_037302.2Genomic Context describing neighboring genes Neighboring gene protein P21 Neighboring gene uncharacterized protein At4g14100 Neighboring gene ADP-ribosylation factor 1 Neighboring gene uncharacterized LOC112324982 Neighboring gene probable receptor-like serine/threonine-protein kinase At5g57670 Neighboring gene small nucleolar RNA snoR99 Neighboring gene uncharacterized LOC18107772

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of flower development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of photoperiodism, flowering IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
zinc finger protein CONSTANS-LIKE 5

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037302.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    11697353..11699174
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006372036.3 → XP_006372098.1  zinc finger protein CONSTANS-LIKE 5

    See identical proteins and their annotated locations for XP_006372098.1

    UniProtKB/TrEMBL
    U5FG52
    Conserved Domains (2) summary
    smart00336
    Location:63 → 110
    BBOX; B-Box-type zinc finger
    pfam06203
    Location:307 → 349
    CCT; CCT motif
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases