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DEFB116 defensin beta 116 [ Pan troglodytes (chimpanzee) ]

Gene ID: 746003, updated on 29-Mar-2024

Summary

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Official Symbol
DEFB116provided by VGNC
Official Full Name
defensin beta 116provided by VGNC
Primary source
VGNC:VGNC:6089
Locus tag
CK820_G0048952
See related
Ensembl:ENSPTRG00000032541
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See DEFB116 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 21 NC_072419.2 (37523357..37528728, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 20 NC_072418.1 (37555102..37560473, complement)

Chromosome 21 - NC_072419.2Genomic Context describing neighboring genes Neighboring gene dickkopf-like protein 1 Neighboring gene CDK5 regulatory subunit-associated protein 3-like Neighboring gene HAUS augmin-like complex subunit 6 Neighboring gene defensin beta 118

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cross-species analysis of the mammalian beta-defensin gene family: presence of syntenic gene clusters and preferential expression in the male reproductive tract. Patil AA, et al. Physiol Genomics, 2005 Sep 21. PMID 16033865

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-defensin 116

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001079928.1 → NP_001073397.1  beta-defensin 116 precursor

    See identical proteins and their annotated locations for NP_001073397.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ012068
    UniProtKB/Swiss-Prot
    Q30KL1
    UniProtKB/TrEMBL
    A0A2J8PZ46
    Related
    ENSPTRP00000054753.1, ENSPTRT00000062199.2
    Conserved Domains (1) summary
    pfam13841
    Location:40 → 68
    Defensin_beta_2; Beta defensin

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072419.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    37523357..37528728 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q30KL1.1 GenPept UniProtKB/Swiss-Prot:Q30KL1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials