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THAPSDRAFT_41650 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7452380, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_41650
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_41650
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 8
Exon count:
2
Sequence:
Chromosome: 8; NC_012071.1 (1184888..1186778, complement)

Chromosome 8 - NC_012071.1Genomic Context describing neighboring genes Neighboring gene sulfolipid biosynthesis protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012071.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on CH-OH group of donors IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002292146.1
  • sequence similarity to choline dehydrogenases and presence of glucose-methanol-choline oxidoreductase domain; putative protein with similarity to oxidoreductases of glucose-methanol-choline family

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012071.1 Reference assembly

    Range
    1184888..1186778 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002292110.1 → XP_002292146.1  hypothetical protein THAPSDRAFT_41650 [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002292146.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C7K7
    Conserved Domains (3) summary
    TIGR01810
    Location:1 → 513
    betA; choline dehydrogenase
    pfam05199
    Location:368 → 503
    GMC_oxred_C; GMC oxidoreductase
    cl21454
    Location:25 → 273
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials