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THAPSDRAFT_33072 sec1-family transport protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7451313, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_33072
Gene description
sec1-family transport protein
Locus tag
THAPSDRAFT_33072
Gene type
protein coding
RNA name
sec1-family transport protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_012066.1 (1584088..1586119)

Chromosome 3 - NC_012066.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene precursor of hydrogenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012066.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables syntaxin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
sec1-family transport protein
XP_002288458.1
  • unc-18-like, N-terminal sequence unknown; related to unc-18, hunc-18

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012066.1 Reference assembly

    Range
    1584088..1586119
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002288422.1 → XP_002288458.1  sec1-family transport protein, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002288458.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BYI3
    Conserved Domains (1) summary
    pfam00995
    Location:13 → 425
    Sec1; Sec1 family
Nucleotide Protein
Heading Accession and Version

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