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THAPSDRAFT_264387 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7450021, updated on 18-Jun-2017

Summary

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Gene symbol
THAPSDRAFT_264387
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_264387
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 16, map: unlocalized
Exon count:
6

NW_002243506.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene MYB DNA binding protein/ transcription factor-like protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_002243506.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Names
hypothetical protein
XP_002296737.1
  • [Putative protein with similarity to Enhanced disease susceptibility 5 (Eds5) (Salicylic acid induction deficient 1) (Sid1)] induced by pathogens and UV radiation; similar to Q9SJU3 (Q9SJU3) Expressed protein (model%: 100, hit%: 77, score: 446, %id: 29) [Arabidopsis thaliana]

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_002243506.1 Reference assembly

    Range
    383284..384935
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002296701.1 → XP_002296737.1  hypothetical protein THAPSDRAFT_264387, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002296737.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8LCP8
    Conserved Domains (2) summary
    COG0534
    Location:1 → 426
    NorM; Na+-driven multidrug efflux pump [Defense mechanisms]
    cl09326
    Location:1 → 425
    MATE_like; Multidrug and toxic compound extrusion family and similar proteins
Nucleotide Protein
Heading Accession and Version

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