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THAPSDRAFT_268881 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7449617, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_268881
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_268881
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_012068.1 (930499..931851)

Chromosome 5 - NC_012068.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012068.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein targeting to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein targeting to vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ESCRT I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002290219.1
  • based on T. pseudonana EST support; putative protein of unknown function

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012068.1 Reference assembly

    Range
    930499..931851
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002290183.1 → XP_002290219.1  hypothetical protein THAPSDRAFT_268881 [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002290219.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C2M1
    Conserved Domains (2) summary
    cl22853
    Location:225 → 356
    Motor_domain; Myosin and Kinesin motor domain
    pfam07200
    Location:228 → 370
    Mod_r; Modifier of rudimentary (Mod(r)) protein
Nucleotide Protein
Heading Accession and Version

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