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THAPSDRAFT_262795 nuclease, Fen1 like, Rad27 family [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7448588, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_262795
Gene description
nuclease, Fen1 like, Rad27 family
Locus tag
THAPSDRAFT_262795
Gene type
protein coding
RNA name
nuclease, Fen1 like, Rad27 family
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 6
Exon count:
1
Sequence:
Chromosome: 6; NC_012069.1 (613771..616035)

Chromosome 6 - NC_012069.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene acyl carrier protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012069.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-flap endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
nuclease, Fen1 like, Rad27 family
XP_002291005.1
  • DNA repair, needed for cleaving the flap strands, also a DS DNA nucleaseContains the N and the I domain

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012069.1 Reference assembly

    Range
    613771..616035
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002290969.2 → XP_002291005.1  nuclease, Fen1 like, Rad27 family [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002291005.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C5G4
    Conserved Domains (2) summary
    cl14812
    Location:1 → 188
    PIN_SF; PIN (PilT N terminus) domain: Superfamily
    cl22433
    Location:209 → 355
    H3TH_StructSpec-5'-nucleases; H3TH domains of structure-specific 5' nucleases (or flap endonuclease-1-like) involved in DNA replication, repair, and recombination
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials