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ssrp1 structure specific recognition protein 1 [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7448150, updated on 21-Dec-2023

Summary

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Gene symbol
ssrp1
Gene description
structure specific recognition protein 1
Locus tag
THAPSDRAFT_262574
Gene type
protein coding
RNA name
structure specific recognition protein 1
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_012068.1 (1498836..1501607, complement)

Chromosome 5 - NC_012068.1Genomic Context describing neighboring genes Neighboring gene gamma-glutamyltransferase Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012068.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of FACT complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
structure specific recognition protein 1
XP_002290767.1
  • based on sequence similarity, presence of HMG domains and EST support from T. pseudonana and T. weissflogii

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012068.1 Reference assembly

    Range
    1498836..1501607 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002290731.1 → XP_002290767.1  structure specific recognition protein 1 [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002290767.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C388
    Conserved Domains (3) summary
    cd01390
    Location:640 → 705
    HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
    cd13231
    Location:323 → 429
    PH2_SSRP1-like; Structure Specific Recognition protein 1 (SSRP1) Pleckstrin homology (PH) domain, repeat 2
    pfam03531
    Location:53 → 273
    SSrecog; Structure-specific recognition protein (SSRP1)
Nucleotide Protein
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