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THAPSDRAFT_5021 3-oxoacyl-synthase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7447264, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_5021
Gene description
3-oxoacyl-synthase
Locus tag
THAPSDRAFT_5021
Gene type
protein coding
RNA name
3-oxoacyl-synthase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_012068.1 (187813..189560)

Chromosome 5 - NC_012068.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene phenylalanyl-trna synthetase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012068.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-oxoacyl-[acyl-carrier-protein] synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
3-oxoacyl-synthase
XP_002290056.1
  • involved in fatty acids biosynthesis. N-terminus contains putative ER signal peptide predicted by SignalP (probability 0.964; cleavage site between pos. 22 and 23: VTA-FS) followed by putative chloroplast transit peptide predicted by TargetP and ChloroP. Putatively chloroplast targeted.; FabB/FabF; yjaY

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012068.1 Reference assembly

    Range
    187813..189560
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002290020.1 → XP_002290056.1  3-oxoacyl-synthase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002290056.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C1R1
    Conserved Domains (2) summary
    cd00834
    Location:43 → 460
    KAS_I_II; Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen ...
    TIGR03150
    Location:43 → 461
    fabF; beta-ketoacyl-acyl-carrier-protein synthase II
Nucleotide Protein
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