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THAPSDRAFT_260890 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7446838, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_260890
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_260890
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_260890 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_012064.1 (1153558..1155759, complement)

Chromosome 1 - NC_012064.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene aldose-1-epimerase Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012064.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in attachment of mitotic spindle microtubules to kinetochore IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic spindle assembly checkpoint signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in kinetochore IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitotic spindle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002286729.1
  • putative protein similar to spindle checkpoint protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012064.1 Reference assembly

    Range
    1153558..1155759 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002286693.1 → XP_002286729.1  hypothetical protein THAPSDRAFT_260890 [Thalassiosira pseudonana CCMP1335]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BQI5
    Conserved Domains (1) summary
    pfam05557
    Location:164 → 549
    MAD; Mitotic checkpoint protein
Nucleotide Protein
Heading Accession and Version

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