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THAPSDRAFT_3416 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7444768, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_3416
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_3416
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_012066.1 (903974..904933, complement)

Chromosome 3 - NC_012066.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012066.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Hsp90 protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012066.1 Reference assembly

    Range
    903974..904933 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002288778.1 → XP_002288814.1  predicted protein [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002288814.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BXQ9
    Conserved Domains (5) summary
    smart00727
    Location:268 → 307
    STI1; Heat shock chaperonin-binding motif
    sd00006
    Location:29 → 59
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:2 → 29
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:132 → 196
    TPR_11; TPR repeat
    pfam13424
    Location:26 → 97
    TPR_12; Tetratricopeptide repeat
Nucleotide Protein
Heading Accession and Version

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