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TUB1 tubulin alpha [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7443528, updated on 21-Dec-2023

Summary

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Gene symbol
TUB1
Gene description
tubulin alpha
Locus tag
THAPSDRAFT_29304
Gene type
protein coding
RNA name
tubulin alpha
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 9
Exon count:
5
Sequence:
Chromosome: 9; NC_012072.1 (428470..430695)

Chromosome 9 - NC_012072.1Genomic Context describing neighboring genes Neighboring gene thioredoxin Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012072.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
tubulin alpha
XP_002292237.1
  • cytoskeletal protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012072.1 Reference assembly

    Range
    428470..430695
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002292201.1 → XP_002292237.1  tubulin alpha [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002292237.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C832
    Conserved Domains (2) summary
    PLN00221
    Location:1 → 435
    PLN00221; tubulin alpha chain; Provisional
    cd02186
    Location:2 → 435
    alpha_tubulin; The alpha-tubulin family
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
Research Materials