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THAPSDRAFT_263924 transporter [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7443175, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_263924
Gene description
transporter
Locus tag
THAPSDRAFT_263924
Gene type
protein coding
RNA name
transporter
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 12
Exon count:
1
Sequence:
Chromosome: 12; NC_012075.1 (812702..813202)

Chromosome 12 - NC_012075.1Genomic Context describing neighboring genes Neighboring gene queuine tRNA ribosyltransferase Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012075.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
transporter
XP_002293071.1
  • Multidrug efflux transporters are integral membrane proteins that can mediate transport of toxic compounds over biological memebranes. This gene was identified based on sequence similarity and has some similarity to multidrug transporters. The best hit was to Bacillus subtilis with 29.76% (50/168) identity. This score will likely improve once the gene model is corrected.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012075.1 Reference assembly

    Range
    812702..813202
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002293035.1 → XP_002293071.1  transporter, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002293071.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CAM2
    Conserved Domains (2) summary
    pfam07690
    Location:4 → 167
    MFS_1; Major Facilitator Superfamily
    cl21472
    Location:37 → 167
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials