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THAPSDRAFT_262963 thiaminephosphate pyrophosphorylase thiamine phosphate synthase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7442738, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_262963
Gene description
thiaminephosphate pyrophosphorylase thiamine phosphate synthase
Locus tag
THAPSDRAFT_262963
Gene type
protein coding
RNA name
thiaminephosphate pyrophosphorylase thiamine phosphate synthase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 6
Exon count:
2
Sequence:
Chromosome: 6; NC_012069.1 (1451819..1452410, complement)

Chromosome 6 - NC_012069.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene probable thiamin biosynthetic enzyme Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012069.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables thiamine-phosphate diphosphorylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in thiamine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
thiaminephosphate pyrophosphorylase thiamine phosphate synthase
XP_002291560.1
  • involved in thiamine synthesis (vitamin B1); B1 biosynthesis protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012069.1 Reference assembly

    Range
    1451819..1452410 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002291524.1 → XP_002291560.1  thiaminephosphate pyrophosphorylase thiamine phosphate synthase, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002291560.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C465
    Conserved Domains (1) summary
    cd00564
    Location:6 → 193
    TMP_TenI; Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases