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THAPSDRAFT_264395 phosphatidylinositol 3-kinase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7442600, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_264395
Gene description
phosphatidylinositol 3-kinase
Locus tag
THAPSDRAFT_264395
Gene type
protein coding
RNA name
phosphatidylinositol 3-kinase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_264395 in Genome Data Viewer
Location:
chromosome: 16, map: unlocalized
Exon count:
4

NW_002243507.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene probable microsomal delta-5 desaturase Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_002243507.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol-3-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy of peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol-3-phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of phosphatidylinositol 3-kinase complex, class III, type I IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of phosphatidylinositol 3-kinase complex, class III, type II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
phosphatidylinositol 3-kinase
XP_002296868.1
  • contains conserved Phosphatidylinositol 3- and 4-kinase domain (IPR000403). Phosphatidylinositol 3-kinase (PI3-kinase) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_002243507.1 Reference assembly

    Range
    49784..50919 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002296832.1 → XP_002296868.1  phosphatidylinositol 3-kinase, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002296868.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8LCU5
    Conserved Domains (1) summary
    cl21453
    Location:1 → 254
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version

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