U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

THAPSDRAFT_264371 transporter belonging to the MFS superfamily [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7442521, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
THAPSDRAFT_264371
Gene description
transporter belonging to the MFS superfamily
Locus tag
THAPSDRAFT_264371
Gene type
protein coding
RNA name
transporter belonging to the MFS superfamily
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 16, map: unlocalized
Exon count:
1

NW_002243506.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_002243506.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Names
transporter belonging to the MFS superfamily
XP_002296799.1
  • Good hits to other MFS transporters. The best hit was to a tetracycline resistance protein from Pyrobaculum aerophilum with 20.34% (72/354) identity. This protein also contains InterPro domain #IPR003662 and IPR000169 which are characteristic of general substrate transporters and of eukaryotic thiol proteases, respectively. This protein has relatively good homology to pfam model #PF00083 for sugar (and other) transporters (21% identity over an alignment of 97 amino acids).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_002243506.1 Reference assembly

    Range
    277453..278598 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002296763.2 → XP_002296799.1  transporter belonging to the MFS superfamily [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002296799.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8LCK4
    Conserved Domains (2) summary
    cd06174
    Location:1 → 162
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
    pfam07690
    Location:1 → 341
    MFS_1; Major Facilitator Superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials