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COLEC11 collectin subfamily member 11 [ Pan troglodytes (chimpanzee) ]

Gene ID: 743061, updated on 17-Aug-2024

Summary

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Official Symbol
COLEC11provided by VGNC
Official Full Name
collectin subfamily member 11provided by VGNC
Primary source
VGNC:VGNC:209
Locus tag
CK820_G0009904
See related
Ensembl:ENSPTRG00000011616
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 12 NC_072410.2 (119204817..119254567, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 2A NC_072399.1 (3598681..3648415)

Chromosome 12 - NC_072410.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129143088 Neighboring gene doublecortin domain containing 2C Neighboring gene uncharacterized LOC107972098 Neighboring gene allantoicase Neighboring gene thymosin beta-4-like Neighboring gene uncharacterized LOC107972070 Neighboring gene ribosomal protein S7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
collectin-11
Names
collectin sub-family member 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072410.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    119204817..119254567 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063789360.1 → XP_063645430.1  collectin-11 isoform X8

    UniProtKB/TrEMBL
    A0A2J8NM73

  2. XM_063789359.1 → XP_063645429.1  collectin-11 isoform X8

    UniProtKB/TrEMBL
    A0A2J8NM73

  3. XM_063789356.1 → XP_063645426.1  collectin-11 isoform X8

    UniProtKB/TrEMBL
    A0A2J8NM73

  4. XM_063789358.1 → XP_063645428.1  collectin-11 isoform X8

    UniProtKB/TrEMBL
    A0A2J8NM73

  5. XM_063789357.1 → XP_063645427.1  collectin-11 isoform X8

    UniProtKB/TrEMBL
    A0A2J8NM73

  6. XM_063789362.1 → XP_063645432.1  collectin-11 isoform X10

    UniProtKB/TrEMBL
    A0A2I3SJK1, A0A2J8NM81, A0A6D2WFJ3

  7. XM_001150759.8 → XP_001150759.1  collectin-11 isoform X13

    See identical proteins and their annotated locations for XP_001150759.1

    UniProtKB/TrEMBL
    A0A2I3ST26
    Related
    ENSPTRP00000080092.1
    Conserved Domains (1) summary
    cd03591
    Location:127 → 242
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)

  8. XM_001150622.7 → XP_001150622.2  collectin-11 isoform X9

    See identical proteins and their annotated locations for XP_001150622.2

    UniProtKB/TrEMBL
    A0A2J8NM73, A0A2J8NM83, A0A6D2WPY9, H2QHD5
    Related
    ENSPTRP00000019977.3
    Conserved Domains (2) summary
    cd03591
    Location:151 → 266
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:44 → 97
    Collagen; Collagen triple helix repeat (20 copies)

  9. XM_063789361.1 → XP_063645431.1  collectin-11 isoform X9

    UniProtKB/TrEMBL
    A0A2J8NM73, A0A2J8NM83, A0A6D2WPY9, H2QHD5

  10. XM_063789351.1 → XP_063645421.1  collectin-11 isoform X3

  11. XM_063789349.1 → XP_063645419.1  collectin-11 isoform X1

  12. XM_063789354.1 → XP_063645424.1  collectin-11 isoform X6

    UniProtKB/TrEMBL
    A0A2J8NM73

  13. XM_063789350.1 → XP_063645420.1  collectin-11 isoform X2

  14. XM_063789352.1 → XP_063645422.1  collectin-11 isoform X4

  15. XM_063789355.1 → XP_063645425.1  collectin-11 isoform X7

    UniProtKB/TrEMBL
    A0A2I3ST26

  16. XM_063789353.1 → XP_063645423.1  collectin-11 isoform X5

    UniProtKB/TrEMBL
    A0A2J8NM73

  17. XM_001150564.8 → XP_001150564.1  collectin-11 isoform X14

    UniProtKB/TrEMBL
    A0A2I3RGX9, A0A2J8NM76, A0A2J8NMA3, A0A6D2WB38
    Related
    ENSPTRP00000063946.1
    Conserved Domains (2) summary
    cd03591
    Location:125 → 240
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:18 → 71
    Collagen; Collagen triple helix repeat (20 copies)

  18. XM_063789363.1 → XP_063645433.1  collectin-11 isoform X12

    UniProtKB/TrEMBL
    A0A2I3SJK1, A0A2J8NM81, A0A6D2WFJ3

  19. XM_009441924.5 → XP_009440199.1  collectin-11 isoform X11

    UniProtKB/TrEMBL
    A0A2J8NMA3
    Conserved Domains (2) summary
    cd03591
    Location:147 → 262
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:17 → 89
    Collagen; Collagen triple helix repeat (20 copies)

  20. XM_003949743.6 → XP_003949792.1  collectin-11 isoform X15

    UniProtKB/TrEMBL
    A0A2I3RI29, A0A2J8NM97, A0A2J8NMA3, A0A6D2WI85
    Related
    ENSPTRP00000064332.1
    Conserved Domains (1) summary
    cd03591
    Location:101 → 216
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)

  21. XM_024354187.3 → XP_024209955.1  collectin-11 isoform X12

    UniProtKB/TrEMBL
    A0A2I3SJK1, A0A2J8NM81, A0A6D2WFJ3
    Conserved Domains (1) summary
    cd03591
    Location:132 → 247
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
Nucleotide Protein
Heading Accession and Version

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