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ABLIM3 actin binding LIM protein family member 3 [ Pan troglodytes (chimpanzee) ]

Gene ID: 741703, updated on 29-Mar-2024

Summary

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Official Symbol
ABLIM3provided by VGNC
Official Full Name
actin binding LIM protein family member 3provided by VGNC
Primary source
VGNC:VGNC:3887
Locus tag
CK820_G0010050
See related
Ensembl:ENSPTRG00000017393
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See ABLIM3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 4 NC_072402.2 (146871471..146990067)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 5 NC_072403.1 (146883999..147002628)

Chromosome 4 - NC_072402.2Genomic Context describing neighboring genes Neighboring gene SH3 domain and tetratricopeptide repeats 2 Neighboring gene U6 spliceosomal RNA Neighboring gene microRNA mir-584 Neighboring gene uncharacterized LOC134809985 Neighboring gene uncharacterized LOC112209243 Neighboring gene actin filament associated protein 1 like 1 Neighboring gene GrpE like 2, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lamellipodium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
actin-binding LIM protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072402.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    146871471..146990067
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001162953.5 → XP_001162953.1  actin-binding LIM protein 3

    See identical proteins and their annotated locations for XP_001162953.1

    UniProtKB/TrEMBL
    A0A2I3SKT5, A0A2J8NJC6, A0A6D2Y7C7, H2QRR5
    Related
    ENSPTRP00000077627.1
    Conserved Domains (6) summary
    smart00153
    Location:648 → 683
    VHP; Villin headpiece domain
    cd09327
    Location:23 → 74
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:79 → 134
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:151 → 202
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:210 → 265
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam16182
    Location:273 → 647
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

RNA

  1. XR_008548107.2 RNA Sequence

  2. XR_008548108.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials