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bdh2.L 3-hydroxybutyrate dehydrogenase 2 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734851, updated on 11-Apr-2024

Summary

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Official Symbol
bdh2.L
Official Full Name
3-hydroxybutyrate dehydrogenase 2 L homeolog
Primary source
Xenbase:XB-GENE-985759
Locus tag
XELAEV_18005716mg
See related
EnsemblRapid:ENSXLAG00005010132
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
bdh2
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Genomic context

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See bdh2.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (77950869..77962152)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (67091435..67104495)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene dpy-19 like C-mannosyltransferase 1 L homeolog Neighboring gene protein kinase C theta type-like Neighboring gene solute carrier family 9 member B2 L homeolog Neighboring gene CDGSH iron sulfur domain 2 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two distinct modes of DNMT1 recruitment ensure stable maintenance DNA methylation. Nishiyama A, et al. Nat Commun, 2020 Mar 6. PMID 32144273, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC131325

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables 3-hydroxybutyrate dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
  
enables 4-oxoproline reductase activity IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within heme metabolic process ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_positive_effect intracellular sequestering of iron ion ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within lipid metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within siderophore biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within siderophore biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
dehydrogenase/reductase SDR family member 6
Names
(R)-beta-hydroxybutyrate dehydrogenase
3-hydroxybutyrate dehydrogenase, type 2 L homeolog
4-oxo-L-proline reductase
R-beta-hydroxybutyrate dehydrogenase
oxidoreductase UCPA
short chain dehydrogenase/reductase family 15C member 1
NP_001089786.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096317.1 → NP_001089786.1  dehydrogenase/reductase SDR family member 6

    See identical proteins and their annotated locations for NP_001089786.1

    Status: PROVISIONAL

    Source sequence(s)
    BC106561
    UniProtKB/Swiss-Prot
    Q3KPT7
    UniProtKB/TrEMBL
    A0A974I2W6
    Related
    ENSXLAP00005029863.1, ENSXLAT00005030613.1
    Conserved Domains (2) summary
    cd05368
    Location:5 → 245
    DHRS6_like_SDR_c; human DHRS6-like, classical (c) SDRs
    PRK06138
    Location:2 → 244
    PRK06138; short chain dehydrogenase; Provisional

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    77950869..77962152
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3KPT7.1 GenPept UniProtKB/Swiss-Prot:Q3KPT7

Gene LinkOut

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Molecular Biology Databases
Research Materials