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spag6.L sperm associated antigen 6 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734748, updated on 11-Apr-2024

Summary

Official Symbol
spag6.L
Official Full Name
sperm associated antigen 6 L homeolog
Primary source
Xenbase:XB-GENE-942182
Locus tag
XELAEV_18030785mg
See related
EnsemblRapid:ENSXLAG00005032929
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
PF16; PF-16; spag6
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Genomic context

See spag6.L in Genome Data Viewer
Location:
chromosome: 6L
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (26104895..26205971, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (23616384..23717807, complement)

Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121394534 Neighboring gene armadillo repeat containing 3 L homeolog Neighboring gene phosphatidylinositol-5-phosphate 4-kinase, type II, alpha L homeolog Neighboring gene BMI1 proto-oncogene, polycomb ring finger L homeolog Neighboring gene COMM domain containing 3 L homeolog

Genomic regions, transcripts, and products

General gene information

Clone Names

  • MGC130870

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in acrosomal vesicle IEA
Inferred from Electronic Annotation
more info
 
located_in axoneme IEA
Inferred from Electronic Annotation
more info
 
located_in microtubule cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
located_in sperm principal piece IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
sperm associated antigen 6 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096217.1NP_001089686.1  sperm associated antigen 6 L homeolog

    See identical proteins and their annotated locations for NP_001089686.1

    Status: PROVISIONAL

    Source sequence(s)
    BC106335
    UniProtKB/TrEMBL
    A0A974HF19, Q3KQ89
    Related
    ENSXLAP00005098868.1, ENSXLAT00005100714.1
    Conserved Domains (4) summary
    cd00020
    Location:77195
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    pfam13646
    Location:130234
    HEAT_2; HEAT repeats
    sd00044
    Location:289325
    HEAT; HEAT repeat [structural motif]
    sd00043
    Location:121152
    ARM; armadillo repeat [structural motif]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    26104895..26205971 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)