U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

smpd3.L sphingomyelin phosphodiesterase 3 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734723, updated on 11-Apr-2024

Summary

Go to the top of the page Help
Official Symbol
smpd3.L
Official Full Name
sphingomyelin phosphodiesterase 3 L homeolog
Primary source
Xenbase:XB-GENE-1013645
Locus tag
XELAEV_18022478mg
See related
EnsemblRapid:ENSXLAG00005019067
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
smpd3
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See smpd3.L in Genome Data Viewer
Location:
chromosome: 4L
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (40316389..40440270, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (37800406..37891056, complement)

Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 7 member 6 opposite strand L homeolog Neighboring gene protein arginine methyltransferase 7 L homeolog Neighboring gene uncharacterized LOC121403003 Neighboring gene phospholipase A2 group IB like L homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC115457

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within sphingolipid metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within sphingomyelin metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
sphingomyelin phosphodiesterase 3 L homeolog
Names
sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)
NP_001089663.1
XP_041445361.1
XP_041445362.1
XP_041445363.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096194.1 → NP_001089663.1  sphingomyelin phosphodiesterase 3 L homeolog

    See identical proteins and their annotated locations for NP_001089663.1

    Status: PROVISIONAL

    Source sequence(s)
    BC100234
    UniProtKB/TrEMBL
    A0A974D556, Q498F7
    Related
    ENSXLAP00005056276.1, ENSXLAT00005057508.1
    Conserved Domains (1) summary
    cd09078
    Location:320 → 650
    nSMase; Neutral sphingomyelinases (nSMase) catalyze the hydrolysis of sphingomyelin in biological membranes to ceramide and phosphorylcholine

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    40316389..40440270 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041589429.1 → XP_041445363.1  sphingomyelin phosphodiesterase 3 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974D556, Q498F7
    Conserved Domains (1) summary
    cd09078
    Location:320 → 650
    nSMase; Neutral sphingomyelinases (nSMase) catalyze the hydrolysis of sphingomyelin in biological membranes to ceramide and phosphorylcholine

  2. XM_041589427.1 → XP_041445361.1  sphingomyelin phosphodiesterase 3 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974D556, Q498F7
    Conserved Domains (1) summary
    cd09078
    Location:320 → 650
    nSMase; Neutral sphingomyelinases (nSMase) catalyze the hydrolysis of sphingomyelin in biological membranes to ceramide and phosphorylcholine

  3. XM_041589428.1 → XP_041445362.1  sphingomyelin phosphodiesterase 3 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974D556, Q498F7
    Conserved Domains (1) summary
    cd09078
    Location:320 → 650
    nSMase; Neutral sphingomyelinases (nSMase) catalyze the hydrolysis of sphingomyelin in biological membranes to ceramide and phosphorylcholine
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.