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rad52.S RAD52 homolog, DNA repair protein S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734642, updated on 11-Apr-2024

Summary

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Official Symbol
rad52.S
Official Full Name
RAD52 homolog, DNA repair protein S homeolog
Primary source
Xenbase:XB-GENE-991160
Locus tag
XELAEV_18019879mg
See related
EnsemblRapid:ENSXLAG00005000884
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rad52
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Genomic context

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See rad52.S in Genome Data Viewer
Location:
chromosome: 3S
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (5932087..5943277)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (5944343..5955445)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene F-box and leucine-rich repeat protein 14 S homeolog Neighboring gene ELKS/RAB6-interacting/CAST family member 1 S homeolog Neighboring gene WNK lysine deficient protein kinase 1 S homeolog Neighboring gene uncharacterized LOC121402093 Neighboring gene ninjurin 2 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC115453

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within DNA recombinase assembly IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within DNA recombination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within DNA repair IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within double-strand break repair via single-strand annealing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mitotic recombination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RAD52 homolog, DNA repair protein S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096116.1 → NP_001089585.1  RAD52 homolog, DNA repair protein S homeolog

    See identical proteins and their annotated locations for NP_001089585.1

    Status: PROVISIONAL

    Source sequence(s)
    BC099014
    UniProtKB/TrEMBL
    Q4KLT1
    Related
    ENSXLAP00005002648.1, ENSXLAT00005002700.1
    Conserved Domains (1) summary
    cl01936
    Location:35 → 196
    Rad52_Rad22; Rad52/22 family double-strand break repair protein

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    5932087..5943277
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041587723.1 → XP_041443657.1  RAD52 homolog, DNA repair protein S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8GQQ7, A0A974D7P8
    Conserved Domains (1) summary
    cl01936
    Location:35 → 196
    Rad52_Rad22; Rad52/22 family double-strand break repair protein

  2. XM_041587724.1 → XP_041443658.1  RAD52 homolog, DNA repair protein S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1MQI8
    Conserved Domains (1) summary
    cl01936
    Location:35 → 196
    Rad52_Rad22; Rad52/22 family double-strand break repair protein

  3. XM_041587721.1 → XP_041443655.1  RAD52 homolog, DNA repair protein S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8GQQ7, A0A974D7P8
    Conserved Domains (1) summary
    cl01936
    Location:35 → 196
    Rad52_Rad22; Rad52/22 family double-strand break repair protein

  4. XM_041587720.1 → XP_041443654.1  RAD52 homolog, DNA repair protein S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8GQQ7, A0A974D7P8
    Related
    ENSXLAP00005002651.1, ENSXLAT00005002703.1
    Conserved Domains (1) summary
    cl01936
    Location:35 → 196
    Rad52_Rad22; Rad52/22 family double-strand break repair protein

  5. XM_041587722.1 → XP_041443656.1  RAD52 homolog, DNA repair protein S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8GQQ7, A0A974D7P8
    Conserved Domains (1) summary
    cl01936
    Location:35 → 196
    Rad52_Rad22; Rad52/22 family double-strand break repair protein

RNA

  1. XR_005966505.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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