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adat2.L adenosine deaminase, tRNA-specific 2 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734534, updated on 11-Apr-2024

Summary

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Official Symbol
adat2.L
Official Full Name
adenosine deaminase, tRNA-specific 2 L homeolog
Primary source
Xenbase:XB-GENE-963032
Locus tag
XELAEV_18027033mg
See related
EnsemblRapid:ENSXLAG00005019672
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
adat2; deadc1
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Genomic context

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Location:
chromosome: 5L
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5L NC_054379.1 (66614266..66635371)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5L NC_030732.1 (68088062..68109082, complement)

Chromosome 5L - NC_054379.1Genomic Context describing neighboring genes Neighboring gene serine/arginine-rich splicing factor 9-like Neighboring gene alpha-L-fucosidase 2 L homeolog Neighboring gene peroxisomal biogenesis factor 3 L homeolog Neighboring gene lamina-associated polypeptide 2 Neighboring gene androgen-induced 1 L homeolog Neighboring gene uncharacterized LOC121393690

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC115242

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables tRNA-specific adenosine deaminase activity IEA
Inferred from Electronic Annotation
more info
  
enables tRNA-specific adenosine-34 deaminase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within tRNA processing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within tRNA wobble adenosine to inosine editing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
tRNA-specific adenosine deaminase 2
Names
adenosine deaminase, tRNA-specific 2, TAD2 homolog
deaminase domain-containing protein 1
tRNA-specific adenosine-34 deaminase subunit ADAT2
XP_018117577.1
XP_018117579.1
XP_018117580.1
XP_041418780.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    66614266..66635371
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018262088.2 → XP_018117577.1  tRNA-specific adenosine deaminase 2 isoform X1

    UniProtKB/TrEMBL
    A0A8J0VA10
    Related
    ENSXLAP00005057758.1, ENSXLAT00005059113.1

  2. XM_018262091.2 → XP_018117580.1  tRNA-specific adenosine deaminase 2 isoform X4

    UniProtKB/TrEMBL
    A0A8J0V9E1

  3. XM_041562846.1 → XP_041418780.1  tRNA-specific adenosine deaminase 2 isoform X2

    UniProtKB/Swiss-Prot
    Q4V7V8
    UniProtKB/TrEMBL
    A0A8J1KN93
    Conserved Domains (1) summary
    cd01285
    Location:14 → 127
    nucleoside_deaminase; Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a ...

  4. XM_018262090.2 → XP_018117579.1  tRNA-specific adenosine deaminase 2 isoform X3

    UniProtKB/Swiss-Prot
    Q4V7V8
    UniProtKB/TrEMBL
    A0A8J0VE85

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001096014.1: Suppressed sequence

    Description
    NM_001096014.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4V7V8.1 GenPept UniProtKB/Swiss-Prot:Q4V7V8

Gene LinkOut

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