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sgce.S sarcoglycan epsilon S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734393, updated on 2-May-2024

Summary

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Official Symbol
sgce.S
Official Full Name
sarcoglycan epsilon S homeolog
Primary source
Xenbase:XB-GENE-6077711
Locus tag
XELAEV_18032978mg
See related
EnsemblRapid:ENSXLAG00005027154
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
sgce
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Genomic context

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Location:
chromosome: 6S
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (25915127..25964710, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (25398346..25448579, complement)

Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene collagen type I alpha 2 S homeolog Neighboring gene CAS1 domain containing 1 S homeolog Neighboring gene 1 S homeolog Neighboring gene paraoxonase 2 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC115066

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in cell projection IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in dendrite IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
  
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
sarcoglycan epsilon S homeolog
Names
sarcoglycan, epsilon

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095874.1 → NP_001089343.1  sarcoglycan epsilon S homeolog precursor

    See identical proteins and their annotated locations for NP_001089343.1

    Status: PROVISIONAL

    Source sequence(s)
    BC092158
    UniProtKB/TrEMBL
    Q56A58
    Related
    ENSXLAP00005080816.1, ENSXLAT00005082416.1
    Conserved Domains (1) summary
    pfam05510
    Location:12 → 232
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    25915127..25964710 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018268801.2 → XP_018124290.1  sarcoglycan epsilon S homeolog isoform X6

    UniProtKB/TrEMBL
    A0A8J0VLG7
    Related
    ENSXLAP00005081030.1, ENSXLAT00005082641.1

  2. XM_041567236.1 → XP_041423170.1  sarcoglycan epsilon S homeolog isoform X4

    UniProtKB/TrEMBL
    A0A8J1L3L1
    Related
    ENSXLAP00005080737.1, ENSXLAT00005082332.1
    Conserved Domains (1) summary
    pfam05510
    Location:12 → 397
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  3. XM_018268800.2 → XP_018124289.1  sarcoglycan epsilon S homeolog isoform X5

    UniProtKB/TrEMBL
    A0A8J0VPX9
    Related
    ENSXLAP00005080954.1, ENSXLAT00005082565.1

  4. XM_018268798.2 → XP_018124287.1  sarcoglycan epsilon S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0VL70
    Related
    ENSXLAP00005080879.1, ENSXLAT00005082484.1

  5. XM_018268799.2 → XP_018124288.1  sarcoglycan epsilon S homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J0VMC7
    Related
    ENSXLAP00005081117.1, ENSXLAT00005082728.1

  6. XM_018268797.2 → XP_018124286.1  sarcoglycan epsilon S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8FR24, A0A974HDL0
Nucleotide Protein Strain
Heading Accession and Version

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