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pcca.L propionyl-CoA carboxylase subunit alpha L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734347, updated on 18-Sep-2024

Summary

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Official Symbol
pcca.L
Official Full Name
propionyl-CoA carboxylase subunit alpha L homeolog
Primary source
Xenbase:XB-GENE-944990
Locus tag
XELAEV_18013111mg
See related
EnsemblRapid:ENSXLAG00005000494
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
pcca
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Genomic context

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Location:
chromosome: 2L
Exon count:
24
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (125399873..125661297, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (119552428..119812476, complement)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene transmembrane and tetratricopeptide repeat containing 4 L homeolog Neighboring gene gamma-glutamylamine cyclotransferase L homeolog Neighboring gene Zic family member 2 L homeolog Neighboring gene Zic family member 5 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC98342

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ligase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables propionyl-CoA carboxylase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within lipid catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
propionyl-CoA carboxylase subunit alpha L homeolog
Names
propionyl CoA carboxylase, alpha polypeptide
propionyl-CoA carboxylase alpha subunit L homeolog
propionyl-Coenzyme A carboxylase, alpha polypeptide
XP_041438340.1
XP_041438341.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095829.1 → NP_001089298.1  propionyl-CoA carboxylase subunit alpha L homeolog

    See identical proteins and their annotated locations for NP_001089298.1

    Status: PROVISIONAL

    Source sequence(s)
    BC090253
    UniProtKB/TrEMBL
    Q5EAT1
    Conserved Domains (5) summary
    cd06850
    Location:644 → 709
    biotinyl_domain; The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, ...
    smart00878
    Location:379 → 486
    Biotin_carb_C; Biotin carboxylase C-terminal domain
    COG4770
    Location:45 → 710
    PccA; Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid transport and metabolism]
    pfam00289
    Location:45 → 153
    CPSase_L_chain; Carbamoyl-phosphate synthase L chain, N-terminal domain
    pfam02786
    Location:158 → 364
    CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    125399873..125661297 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041582406.1 → XP_041438340.1  propionyl-CoA carboxylase subunit alpha L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8HH71, A0A974DPZ9
    Related
    ENSXLAP00005001395.1, ENSXLAT00005001435.1
    Conserved Domains (1) summary
    COG4770
    Location:59 → 724
    PccA; Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid transport and metabolism]

  2. XM_041582407.1 → XP_041438341.1  propionyl-CoA carboxylase subunit alpha L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1MAG9
    Related
    ENSXLAP00005001393.1, ENSXLAT00005001433.1
    Conserved Domains (1) summary
    COG4770
    Location:58 → 723
    PccA; Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid transport and metabolism]
Nucleotide Protein Strain
Heading Accession and Version

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