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taf3.L TATA-box binding protein associated factor 3 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734328, updated on 11-Apr-2024

Summary

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Official Symbol
taf3.L
Official Full Name
TATA-box binding protein associated factor 3 L homeolog
Primary source
Xenbase:XB-GENE-940285
Locus tag
XELAEV_18017849mg
See related
EnsemblRapid:ENSXLAG00005034235
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
taf3
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See taf3.L in Genome Data Viewer
Location:
chromosome: 3L
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (89557389..89609829, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (74231121..74283723, complement)

Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene paraneoplastic antigen Ma1 homolog Neighboring gene GATA binding protein 3 L homeolog Neighboring gene ATP synthase F1 subunit gamma L homeolog Neighboring gene Kin17 DNA and RNA binding protein L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC85078

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables p53 binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transcription initiation factor TFIID subunit 3
Names
TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa
TBP-associated factor 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095811.1 → NP_001089280.1  transcription initiation factor TFIID subunit 3

    See identical proteins and their annotated locations for NP_001089280.1

    Status: PROVISIONAL

    Source sequence(s)
    BC090215
    UniProtKB/Swiss-Prot
    Q5EAW9
    UniProtKB/TrEMBL
    A0A974DDZ2
    Related
    ENSXLAP00005102260.1, ENSXLAT00005104255.1
    Conserved Domains (1) summary
    cd15522
    Location:783 → 828
    PHD_TAF3; PHD finger found in transcription initiation factor TFIID subunit 3 (TAF3)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    89557389..89609829 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5EAW9.1 GenPept UniProtKB/Swiss-Prot:Q5EAW9

Gene LinkOut

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