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agmat.S agmatinase (putative) S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734257, updated on 11-Apr-2024

Summary

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Official Symbol
agmat.S
Official Full Name
agmatinase (putative) S homeolog
Primary source
Xenbase:XB-GENE-997018
Locus tag
XELAEV_18038006mg
See related
EnsemblRapid:ENSXLAG00005011619
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
agmat
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See agmat.S in Genome Data Viewer
Location:
chromosome: 7S
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7S NC_054384.1 (110089317..110099146, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7S NC_030737.1 (87266267..87276221)

Chromosome 7S - NC_054384.1Genomic Context describing neighboring genes Neighboring gene caspase 9 S homeolog Neighboring gene DnaJ heat shock protein family (Hsp40) member C16 S homeolog Neighboring gene cytidine deaminase S homeolog Neighboring gene anionic trypsin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC85123

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables agmatinase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within putrescine biosynthetic process from arginine, using agmatinase IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
agmatinase (putative) S homeolog
Names
agmatinase S homeolog
agmatine ureohydrolase (agmatinase)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095741.1 → NP_001089210.1  agmatinase (putative) S homeolog

    See identical proteins and their annotated locations for NP_001089210.1

    Status: PROVISIONAL

    Source sequence(s)
    BC089134
    UniProtKB/TrEMBL
    A0A974CDG6, Q5HZ88
    Related
    ENSXLAP00005033900.1, ENSXLAT00005034777.1
    Conserved Domains (1) summary
    cd11592
    Location:92 → 380
    Agmatinase_PAH; Agmatinase-like family includes proclavaminic acid amidinohydrolase

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054384.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    110089317..110099146 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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