U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

marveld3 MARVEL domain containing 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 733786, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
marveld3provided by Xenbase
Official Full Name
MARVEL domain containing 3provided by Xenbase
Primary source
Xenbase:XB-GENE-5929351
See related
Ensembl:ENSXETG00000019861
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
md3
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See marveld3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (59393146..59401545, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (61950981..61958769, complement)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene adaptor related protein complex 1 subunit gamma 1 Neighboring gene small nucleolar RNA SNORD71 Neighboring gene PH domain and leucine rich repeat protein phosphatase 2 Neighboring gene TERF1 (TRF1)-interacting nuclear factor 2 Neighboring gene spire-type actin nucleation factor 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
MARVEL domain-containing protein 3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045569.1 → NP_001039034.1  MARVEL domain-containing protein 3

    See identical proteins and their annotated locations for NP_001039034.1

    Status: PROVISIONAL

    Source sequence(s)
    CR762182
    UniProtKB/TrEMBL
    F6PTK0, Q28F40
    Conserved Domains (2) summary
    TIGR01642
    Location:3 → 131
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    pfam01284
    Location:217 → 404
    MARVEL; Membrane-associating domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    59393146..59401545 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012961255.3 → XP_012816709.2  MARVEL domain-containing protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A6I8Q4V4, A0A6I8QX53
    Related
    ENSXETP00000064593.2, ENSXETT00000072059.2
    Conserved Domains (2) summary
    TIGR01642
    Location:31 → 159
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    cl28046
    Location:213 → 276
    Pox_LP_H2; Viral late protein H2

  2. XM_012961258.3 → XP_012816712.2  MARVEL domain-containing protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A6I8QX53, A0A8J1JG83
    Related
    ENSXETP00000072916.2, ENSXETT00000091247.2
    Conserved Domains (2) summary
    TIGR01642
    Location:3 → 131
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    cl28046
    Location:185 → 248
    Pox_LP_H2; Viral late protein H2

  3. XM_031900155.1 → XP_031756015.1  MARVEL domain-containing protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A6I8QX53, A0A8J1JG83
    Conserved Domains (2) summary
    TIGR01642
    Location:3 → 131
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    cl28046
    Location:185 → 248
    Pox_LP_H2; Viral late protein H2

  4. XM_012961256.2 → XP_012816710.2  MARVEL domain-containing protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A8J0SKE5, F6PTK0
    Related
    ENSXETP00000042970.5, ENSXETT00000042970.5
    Conserved Domains (2) summary
    TIGR01642
    Location:31 → 159
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    pfam01284
    Location:245 → 432
    MARVEL; Membrane-associating domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.