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Sec61alpha SEC61 translocon subunit alpha [ Bombyx mori (domestic silkworm) ]

Gene ID: 733068, updated on 24-May-2024

Summary

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Gene symbol
Sec61alpha
Gene description
SEC61 translocon subunit alpha
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bombyx mori
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx
Orthologs
fruit fly all
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Genomic context

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See Sec61alpha in Genome Data Viewer
Location:
chromosome: 22
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_01 current ASM3026992v2 (GCF_030269925.1) 22 NC_085128.1 (3658795..3664253)
103 previous assembly Bmori_2016v1.0 (GCF_014905235.1) 22 NC_051379.1 (3678859..3684317)

Chromosome 22 - NC_085128.1Genomic Context describing neighboring genes Neighboring gene dnaJ homolog dnj-5 Neighboring gene Tsr1 ribosome assembly factor Neighboring gene midnolin homolog Neighboring gene ATP binding cassette subfamily D member Pmp70 Neighboring gene uncharacterized LOC119630258

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptomic analysis of developmental features of Bombyx mori wing disc during metamorphosis. Ou J, et al. BMC Genomics, 2014 Sep 27. PMID 25261999, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signal sequence binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in SRP-dependent cotranslational protein targeting to membrane, translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in post-translational protein targeting to membrane, translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Sec61 translocon complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SEC61 translocon subunit alpha
Names
transport protein Sec61 alpha subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044163.1 → NP_001037628.1  SEC61 translocon subunit alpha

    See identical proteins and their annotated locations for NP_001037628.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ533987
    UniProtKB/TrEMBL
    B7U2V4, Q19AA9
    Conserved Domains (1) summary
    PTZ00219
    Location:1 → 469
    PTZ00219; Sec61 alpha subunit; Provisional

RefSeqs of Annotated Genomes: GCF_030269925.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3026992v2 Primary Assembly

Genomic

  1. NC_085128.1 Reference ASM3026992v2 Primary Assembly

    Range
    3658795..3664253
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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