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Mir317 microRNA mir-317 [ Apis mellifera (honey bee) ]

Gene ID: 732509, updated on 22-Apr-2023

Summary

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Gene symbol
Mir317
Gene description
microRNA mir-317
See related
miRBase:MI0001593
Gene type
ncRNA
RefSeq status
PROVISIONAL
Organism
Apis mellifera
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
Also known as
Mirn317; mir-317
Summary
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
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Genomic context

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See Mir317 in Genome Data Viewer
Location:
chromosome: LG5
Exon count:
1
Annotation release Status Assembly LG Location
104 current Amel_HAv3.1 (GCF_003254395.2) LG5 NC_037642.1 (7037216..7037305)
103 previous assembly Amel_4.5 (GCF_000002195.4) LG5 NC_007074.3 (6935820..6935909)

Linkage Group LG5 - NC_037642.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107964422 Neighboring gene sodium/potassium-transporting ATPase subunit alpha Neighboring gene uncharacterized LOC113218806 Neighboring gene ribosomal RNA processing protein 36 homolog Neighboring gene DNA-directed RNA polymerases I, II, and III subunit Rpb8 Neighboring gene uncharacterized LOC107964423 Neighboring gene microRNA mir-277

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Computational and transcriptional evidence for microRNAs in the honey bee genome. Weaver DB, et al. Genome Biol, 2007. PMID 17543122, Free PMC Article
  2. Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome. Greenberg JK, et al. Genes Brain Behav, 2012 Aug. PMID 22409512, Free PMC Article
  3. miRBase: integrating microRNA annotation and deep-sequencing data. Kozomara A, et al. Nucleic Acids Res, 2011 Jan. PMID 21037258, Free PMC Article
  4. ProtoBee: hierarchical classification and annotation of the honey bee proteome. Kaplan N, et al. Genome Res, 2006 Nov. PMID 17065614, Free PMC Article
  5. miRBase: microRNA sequences, targets and gene nomenclature. Griffiths-Jones S, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381832, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • ame-mir-317
  • microRNA 317

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_031526.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    QIUM02000019

RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Amel_HAv3.1 Primary Assembly

Genomic

  1. NC_037642.1 Reference Amel_HAv3.1 Primary Assembly

    Range
    7037216..7037305
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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