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ATG3 autophagy related 3 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 708305, updated on 5-Mar-2024

Summary

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Official Symbol
ATG3provided by VGNC
Official Full Name
autophagy related 3provided by VGNC
Primary source
VGNC:VGNC:70105
Locus tag
EGK_11288
See related
Ensembl:ENSMMUG00000014232
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See ATG3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (163616400..163645270)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (33599828..33628719, complement)

Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 80 Neighboring gene solute carrier family 35 member A5 Neighboring gene B and T lymphocyte associated Neighboring gene CD200 molecule

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Atg8-family ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-like-conjugating enzyme ATG3
Names
ATG3 autophagy related 3 homolog
NP_001181205.1
XP_028699118.1
XP_028699119.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001194276.2 → NP_001181205.1  ubiquitin-like-conjugating enzyme ATG3

    See identical proteins and their annotated locations for NP_001181205.1

    Status: PROVISIONAL

    Source sequence(s)
    QNVO02000283
    UniProtKB/TrEMBL
    A0A8J8Y1J2, G7MKB0, H9FYG6
    Related
    ENSMMUP00000071286.1, ENSMMUT00000083931.1
    Conserved Domains (3) summary
    pfam03986
    Location:8 → 135
    Autophagy_N; Autophagocytosis associated protein (Atg3), N-terminal domain
    pfam03987
    Location:204 → 265
    Autophagy_act_C; Autophagocytosis associated protein, active-site domain
    pfam10381
    Location:286 → 309
    Autophagy_C; Autophagocytosis associated protein C-terminal

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041755.1 Reference Mmul_10 Primary Assembly

    Range
    163616400..163645270
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028843285.1 → XP_028699118.1  ubiquitin-like-conjugating enzyme ATG3 isoform X1

    Conserved Domains (2) summary
    pfam03986
    Location:8 → 135
    Autophagy_N; Autophagocytosis associated protein (Atg3), N-terminal domain
    pfam03987
    Location:204 → 265
    Autophagy_act_C; Autophagocytosis associated protein, active-site domain

  2. XM_028843286.1 → XP_028699119.1  ubiquitin-like-conjugating enzyme ATG3 isoform X2

    UniProtKB/TrEMBL
    F7D7B0
    Related
    ENSMMUP00000018693.3, ENSMMUT00000019973.4
    Conserved Domains (3) summary
    pfam03986
    Location:8 → 121
    Autophagy_N; Autophagocytosis associated protein (Atg3), N-terminal domain
    pfam03987
    Location:190 → 251
    Autophagy_act_C; Autophagocytosis associated protein, active-site domain
    pfam10381
    Location:272 → 295
    Autophagy_C; Autophagocytosis associated protein C-terminal
Nucleotide Protein
Heading Accession and Version

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