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VPS39 VPS39 subunit of HOPS complex [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 707791, updated on 5-Mar-2024

Summary

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Official Symbol
VPS39provided by VGNC
Official Full Name
VPS39 subunit of HOPS complexprovided by VGNC
Primary source
VGNC:VGNC:79257
Locus tag
EGK_17400
See related
Ensembl:ENSMMUG00000014511
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See VPS39 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
26
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (18647358..18694392, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (18555657..18604003, complement)

Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene phospholipase A2 group IVD Neighboring gene phospholipase A2 group IVF Neighboring gene microRNA mir-627 Neighboring gene transmembrane protein 87A Neighboring gene glucosidase alpha, neutral C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosomal vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vam6/Vps39-like protein
Names
VPS39, HOPS complex subunit
vacuolar protein sorting 39 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001266440.1 → NP_001253369.1  vam6/Vps39-like protein

    See identical proteins and their annotated locations for NP_001253369.1

    Status: PROVISIONAL

    Source sequence(s)
    JV043695
    UniProtKB/TrEMBL
    A0A1D5QWT3, I0FH39
    Related
    ENSMMUP00000075244.1, ENSMMUT00000091539.1
    Conserved Domains (4) summary
    pfam10366
    Location:449 → 551
    Vps39_1; Vacuolar sorting protein 39 domain 1
    pfam10367
    Location:761 → 869
    Vps39_2; Vacuolar sorting protein 39 domain 2
    cl02434
    Location:20 → 280
    CNH; CNH domain
    cl26078
    Location:650 → 735
    Clathrin; Region in Clathrin and VPS

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041760.1 Reference Mmul_10 Primary Assembly

    Range
    18647358..18694392 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028850337.1 → XP_028706170.1  vam6/Vps39-like protein isoform X1

    UniProtKB/TrEMBL
    A0A1D5QWT3, A0A5S6R6N5, A0A8J8XRV3, F7GE10, G7MWY6
    Related
    ENSMMUP00000019058.4, ENSMMUT00000020362.4
    Conserved Domains (4) summary
    pfam10366
    Location:460 → 562
    Vps39_1; Vacuolar sorting protein 39 domain 1
    pfam10367
    Location:772 → 879
    Vps39_2; Vacuolar sorting protein 39 domain 2
    cl02434
    Location:20 → 291
    CNH; CNH domain
    cl26078
    Location:661 → 747
    Clathrin; Region in Clathrin and VPS
Nucleotide Protein
Heading Accession and Version

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