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SJAG_04670 transcription elongation factor Spt6 [ Schizosaccharomyces japonicus yFS275 ]

Gene ID: 7051462, updated on 17-May-2024

Summary

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Gene symbol
SJAG_04670
Gene description
transcription elongation factor Spt6
Primary source
FungiDB:SJAG_04670
Locus tag
SJAG_04670
Gene type
protein coding
RNA name
transcription elongation factor Spt6
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces japonicus yFS275 (strain: yFS275)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See SJAG_04670 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
1

NW_011627862.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S25 Neighboring gene mediator-replication checkpoint 1 Neighboring gene ATP-dependent RNA helicase Has1 Neighboring gene Trp-like ion channel Pkd2 Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011627862.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by JaponicusDB

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables H3-H4 histone complex chaperone activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
  
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
involved_in transcription elongation-coupled chromatin remodeling IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of pericentric heterochromatin IEA
Inferred from Electronic Annotation
more info
  
part_of transcription elongation factor complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Names
transcription elongation factor Spt6

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_011627862.1 Reference assembly

    Range
    382781..387148 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002175721.2 → XP_002175757.1  transcription elongation factor Spt6 [Schizosaccharomyces japonicus yFS275]

    See identical proteins and their annotated locations for XP_002175757.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B6K7G0
    Conserved Domains (10) summary
    cd09918
    Location:1173 → 1263
    SH2_Nterm_SPT6_like; N-terminal Src homology 2 (SH2) domain found in Spt6
    cd09928
    Location:1273 → 1362
    SH2_Cterm_SPT6_like; C-terminal Src homology 2 (SH2) domain found in Spt6
    COG2183
    Location:306 → 1178
    Tex; Transcriptional accessory protein Tex/SPT6 [Transcription]
    pfam14632
    Location:67 → 139
    SPT6_acidic; Acidic N-terminal SPT6
    pfam14633
    Location:1149 → 1360
    SH2_2; SH2 domain
    pfam14641
    Location:282 → 394
    HTH_44; Helix-turn-helix DNA-binding domain of SPT6
    pfam14878
    Location:943 → 1049
    DLD; Death-like domain of SPT6
    cl09927
    Location:1056 → 1125
    S1_like; S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. ...
    cl21482
    Location:692 → 829
    RuvC_resolvase; Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes ...
    cl22429
    Location:830 → 933
    HHH_5; Helix-hairpin-helix domain
Nucleotide Protein
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