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SJAG_02185 U2 snRNP-associated protein Sap130 [ Schizosaccharomyces japonicus yFS275 ]

Gene ID: 7050160, updated on 17-May-2024

Summary

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Gene symbol
SJAG_02185
Gene description
U2 snRNP-associated protein Sap130
Primary source
FungiDB:SJAG_02185
Locus tag
SJAG_02185
See related
VEuPathDB:SJAG_02185
Gene type
protein coding
RNA name
U2 snRNP-associated protein Sap130
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces japonicus yFS275 (strain: yFS275)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See SJAG_02185 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
1

NW_011627860.1Genomic Context describing neighboring genes Neighboring gene translation elongation factor EF-1 alpha Ef1a-c Neighboring gene RAD51D-like protein 1 Neighboring gene HisK/Mak2 protein kinase Mak2 Neighboring gene DNA replication factor C complex subunit Rfc3 Neighboring gene 40S ribosomal protein S0 Neighboring gene anaphase-promoting complex subunit Apc4 Neighboring gene MutL family mismatch-repair protein Pms1 Neighboring gene translation elongation factor eIF5A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011627860.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative functional genomics of the fission yeasts. Rhind N, et al. Science, 2011 May 20. PMID 21511999, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by JaponicusDB

Function Evidence Code Pubs
enables U2 snRNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
  
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
  
involved_in spliceosomal complex assembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
  
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
  
is_active_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Names
U2 snRNP-associated protein Sap130

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_011627860.1 Reference assembly

    Range
    185286..189345 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002173361.2 → XP_002173397.1  U2 snRNP-associated protein Sap130 [Schizosaccharomyces japonicus yFS275]

    See identical proteins and their annotated locations for XP_002173397.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B6K1S3
    Conserved Domains (2) summary
    pfam03178
    Location:819 → 1134
    CPSF_A; CPSF A subunit region
    pfam10433
    Location:82 → 604
    MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term
Nucleotide Protein
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