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SJAG_04640 enhancer-mRNA decapping Edc3 [ Schizosaccharomyces japonicus yFS275 ]

Gene ID: 7049801, updated on 17-May-2024

Summary

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Gene symbol
SJAG_04640
Gene description
enhancer-mRNA decapping Edc3
Primary source
FungiDB:SJAG_04640
Locus tag
SJAG_04640
See related
VEuPathDB:SJAG_04640
Gene type
protein coding
RNA name
enhancer-mRNA decapping Edc3
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces japonicus yFS275 (strain: yFS275)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See SJAG_04640 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
2

NW_011627862.1Genomic Context describing neighboring genes Neighboring gene nuclear pore complex associated protein Neighboring gene epsin Neighboring gene hexaprenyldihydroxybenzoate methyltransferase Coq3 Neighboring gene vacuolar sorting protein Vps60 Neighboring gene peptidase(MPP) complex alpha subunit Mas2 Neighboring gene iron sulfur cluster assembly protein Neighboring gene protein phosphatase regulatory subunit Ekc1 Neighboring gene general amino acid permease GAP1 Neighboring gene tRNA-Arg Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011627862.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative functional genomics of the fission yeasts. Rhind N, et al. Science, 2011 May 20. PMID 21511999, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by JaponicusDB

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
  
enables molecular condensate scaffold activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in P-body assembly IEA
Inferred from Electronic Annotation
more info
  
involved_in deadenylation-independent decapping of nuclear-transcribed mRNA IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in P-body IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytoplasmic stress granule IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Names
enhancer-mRNA decapping Edc3

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_011627862.1 Reference assembly

    Range
    448859..452189
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002175693.2 → XP_002175729.1  enhancer-mRNA decapping Edc3 [Schizosaccharomyces japonicus yFS275]

    See identical proteins and their annotated locations for XP_002175729.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B6K7D2
    Conserved Domains (3) summary
    cd01737
    Location:3 → 58
    LSm16_N; Like-Sm protein 16, N-terminal domain
    pfam03853
    Location:224 → 388
    YjeF_N; YjeF-related protein N-terminus
    pfam09532
    Location:87 → 158
    FDF; FDF domain
Nucleotide Protein
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