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SJAG_01797 cytoplasmic alanine-tRNA ligase Ala1 [ Schizosaccharomyces japonicus yFS275 ]

Gene ID: 7048225, updated on 17-May-2024

Summary

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Gene symbol
SJAG_01797
Gene description
cytoplasmic alanine-tRNA ligase Ala1
Primary source
FungiDB:SJAG_01797
Locus tag
SJAG_01797
Gene type
protein coding
RNA name
cytoplasmic alanine-tRNA ligase Ala1
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces japonicus yFS275 (strain: yFS275)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See SJAG_01797 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
2

NW_011627862.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene CCAAT-binding factor complex subunit Php3 Neighboring gene eukaryotic protein Neighboring gene CMGC/CK2 protein kinase Cka1 Neighboring gene hypothetical protein Neighboring gene anaphase-promoting complex subunit Hcn1 Neighboring gene xanthine phosphoribosyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011627862.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative functional genomics of the fission yeasts. Rhind N, et al. Science, 2011 May 20. PMID 21511999, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by JaponicusDB

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables alanine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
  
enables aminoacyl-tRNA editing activity IEA
Inferred from Electronic Annotation
more info
  
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in aminoacyl-tRNA metabolism involved in translational fidelity IEA
Inferred from Electronic Annotation
more info
  
involved_in cytoplasmic alanyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
  
involved_in mitochondrial alanyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytosol IEA
Inferred from Electronic Annotation
more info
  
is_active_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Names
cytoplasmic alanine-tRNA ligase Ala1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_011627862.1 Reference assembly

    Range
    2376370..2379503
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002173000.2 → XP_002173036.1  cytoplasmic alanine-tRNA ligase Ala1 [Schizosaccharomyces japonicus yFS275]

    See identical proteins and their annotated locations for XP_002173036.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B6JYX5
    Conserved Domains (4) summary
    PLN02900
    Location:1 → 954
    PLN02900; alanyl-tRNA synthetase
    cd00673
    Location:11 → 258
    AlaRS_core; Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of ...
    pfam02272
    Location:903 → 953
    DHHA1; DHHA1 domain
    cl08469
    Location:529 → 754
    tRNA_SAD; Threonyl and Alanyl tRNA synthetase second additional domain
Nucleotide Protein
Heading Accession and Version

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