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SF3B1 splicing factor 3b subunit 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 697773, updated on 17-Aug-2024

Summary

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Official Symbol
SF3B1provided by VGNC
Official Full Name
splicing factor 3b subunit 1provided by VGNC
Primary source
VGNC:VGNC:77179
Locus tag
EGK_04651
See related
Ensembl:ENSMMUG00000022430
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SF3B1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
26
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 12 NC_041765.1 (84497743..84547040, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (148960226..149069888)

Chromosome 12 - NC_041765.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 44 Neighboring gene ATP synthase F(0) complex subunit C2, mitochondrial pseudogene Neighboring gene nucleophosmin-like Neighboring gene small nucleolar RNA SNORA4 Neighboring gene methylmalonyl-CoA epimerase, mitochondrial-like Neighboring gene coenzyme Q10B Neighboring gene heat shock protein family D (Hsp60) member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in spliceosomal complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 3B subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001265963.2 → NP_001252892.1  splicing factor 3B subunit 1

    See identical proteins and their annotated locations for NP_001252892.1

    Status: PROVISIONAL

    Source sequence(s)
    JV043375
    UniProtKB/TrEMBL
    A0A1D5QES7, A0A5S6R8H3, A0A8J8Y5B4, G7N8K3, H9EP87
    Related
    ENSMMUP00000046546.2, ENSMMUT00000074295.2
    Conserved Domains (4) summary
    smart01104
    Location:241 → 382
    CTD; Spt5 C-terminal nonapeptide repeat binding Spt4
    COG5181
    Location:446 → 1304
    HSH155; U2 snRNP spliceosome subunit [RNA processing and modification]
    sd00044
    Location:850 → 874
    HEAT; HEAT repeat [structural motif]
    pfam08920
    Location:332 → 442
    SF3b1; Splicing factor 3B subunit 1

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041765.1 Reference Mmul_10 Primary Assembly

    Range
    84497743..84547040 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015131731.2 → XP_014987217.1  splicing factor 3B subunit 1 isoform X1

    UniProtKB/TrEMBL
    H9EP87
    Related
    ENSMMUP00000071305.1, ENSMMUT00000104675.1
    Conserved Domains (4) summary
    smart01104
    Location:95 → 236
    CTD; Spt5 C-terminal nonapeptide repeat binding Spt4
    COG5181
    Location:300 → 1158
    HSH155; U2 snRNP spliceosome subunit [RNA processing and modification]
    sd00044
    Location:704 → 728
    HEAT; HEAT repeat [structural motif]
    pfam08920
    Location:186 → 296
    SF3b1; Splicing factor 3B subunit 1

  2. XM_015131732.2 → XP_014987218.1  splicing factor 3B subunit 1 isoform X2

    UniProtKB/TrEMBL
    F7BGA8
    Related
    ENSMMUP00000062521.1, ENSMMUT00000108745.1
Nucleotide Protein
Heading Accession and Version

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