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KDM4B lysine demethylase 4B [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 695760, updated on 17-Aug-2024

Summary

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Official Symbol
KDM4Bprovided by VGNC
Official Full Name
lysine demethylase 4Bprovided by VGNC
Primary source
VGNC:VGNC:73930
See related
Ensembl:ENSMMUG00000012677
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Also known as
JMJD2B
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
24
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 19 NC_041772.1 (4906085..5089153)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 19 NC_027911.1 (5126828..5309815)

Chromosome 19 - NC_041772.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106994613 Neighboring gene arrestin domain containing 5 Neighboring gene ubiquitin like with PHD and ring finger domains 1 Neighboring gene translation initiation factor IF-2-like Neighboring gene protein tyrosine phosphatase receptor type S Neighboring gene 60S ribosomal protein L32 pseudogene Neighboring gene uncharacterized LOC114674029

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H3K9 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 4B
Names
jumonji domain containing 2B
NP_001253377.1
XP_014978024.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001266448.2 → NP_001253377.1  lysine-specific demethylase 4B

    See identical proteins and their annotated locations for NP_001253377.1

    Status: PROVISIONAL

    Source sequence(s)
    JU333518
    UniProtKB/TrEMBL
    A0A1D5QCZ7, H9FRL4
    Related
    ENSMMUP00000045916.2, ENSMMUT00000067101.2
    Conserved Domains (5) summary
    smart00545
    Location:15 → 56
    JmjN; Small domain found in the jumonji family of transcription factors
    smart00333
    Location:921 → 971
    TUDOR; Tudor domain
    pfam02373
    Location:176 → 292
    JmjC; JmjC domain, hydroxylase
    cd15576
    Location:683 → 788
    PHD_JMJD2B; PHD finger found in Jumonji domain-containing protein 2B (JMJD2B)
    cd15714
    Location:797 → 906
    ePHD_JMJD2B; Extended PHD finger found in Jumonji domain-containing protein 2B (JMJD2B)

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041772.1 Reference Mmul_10 Primary Assembly

    Range
    4906085..5089153
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015122538.2 → XP_014978024.2  lysine-specific demethylase 4B isoform X1

    UniProtKB/TrEMBL
    A0A1D5QCZ7, F7E2F6
    Related
    ENSMMUP00000016650.4, ENSMMUT00000017778.4
    Conserved Domains (5) summary
    smart00545
    Location:15 → 56
    JmjN; Small domain found in the jumonji family of transcription factors
    smart00333
    Location:955 → 1005
    TUDOR; Tudor domain
    cd15576
    Location:717 → 822
    PHD_JMJD2B; PHD finger found in Jumonji domain-containing protein 2B (JMJD2B)
    cd15714
    Location:831 → 940
    ePHD_JMJD2B; Extended PHD finger found in Jumonji domain-containing protein 2B (JMJD2B)
    pfam02373
    Location:176 → 292
    JmjC; JmjC domain, hydroxylase
Nucleotide Protein
Heading Accession and Version

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