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LOC6902395 proteasome subunit beta type-6 [ Drosophila pseudoobscura ]

Gene ID: 6902395, updated on 14-Dec-2023

Summary

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Gene symbol
LOC6902395
Gene description
proteasome subunit beta type-6
See related
EnsemblRapid:LOC6902395
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila pseudoobscura
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
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Genomic context

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See LOC6902395 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Annotation release Status Assembly Chr Location
104 current UCI_Dpse_MV25 (GCF_009870125.1) 4 NC_046681.1 (15161651..15162555)

Chromosome 4 - NC_046681.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4816168 Neighboring gene uncharacterized LOC6902393 Neighboring gene uncharacterized LOC6902394 Neighboring gene uncharacterized LOC117183181 Neighboring gene uncharacterized LOC26534209 Neighboring gene adenylate kinase isoenzyme 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046681.1 Chromosome 4 Reference UCI_Dpse_MV25 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables threonine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis involved in protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of proteasome core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
proteasome subunit beta type-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila pseudoobscura Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCI_Dpse_MV25 Primary Assembly

Genomic

  1. NC_046681.1 Reference UCI_Dpse_MV25 Primary Assembly

    Range
    15161651..15162555
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002133294.3 → XP_002133330.1  proteasome subunit beta type-6

    See identical proteins and their annotated locations for XP_002133330.1

    UniProtKB/TrEMBL
    A0A6I8UYC0, B5DKA6
    Related
    XP_002133330.1, XM_002133294.3
    Conserved Domains (2) summary
    TIGR03690
    Location:21 → 207
    20S_bact_beta; proteasome, beta subunit, bacterial type
    cl00467
    Location:22 → 209
    Ntn_hydrolase; The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a ...
Nucleotide Protein Strain
Heading Accession and Version

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