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ari-1 E3 ubiquitin-protein ligase ariadne-1 [ Drosophila pseudoobscura ]

Gene ID: 6902169, updated on 23-May-2024

Summary

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Gene symbol
ari-1
Gene description
E3 ubiquitin-protein ligase ariadne-1
See related
EnsemblRapid:LOC6902169
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila pseudoobscura
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Orthologs
fruit fly all
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Genomic context

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See ari-1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
9
Annotation release Status Assembly Chr Location
104 current UCI_Dpse_MV25 (GCF_009870125.1) X NC_046683.1 (4471460..4477274)

Chromosome X - NC_046683.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 239 Neighboring gene transmembrane protein 242 Neighboring gene kinetochore Mis12-Ndc80 network component 1 Neighboring gene phosphatidylinositol 4-kinase III alpha Neighboring gene protein kinase shaggy Neighboring gene uncharacterized LOC117185087

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046683.1 Chromosome X Reference UCI_Dpse_MV25 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evaluation of different reference based annotation strategies using RNA-Seq - a case study in Drososphila pseudoobscura. Palmieri N, et al. PLoS One, 2012. PMID 23056304, Free PMC Article
  2. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
potential E3 ubiquitin-protein ligase ariadne-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila pseudoobscura Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCI_Dpse_MV25 Primary Assembly

Genomic

  1. NC_046683.1 Reference UCI_Dpse_MV25 Primary Assembly

    Range
    4471460..4477274
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033385095.1 → XP_033240986.1  potential E3 ubiquitin-protein ligase ariadne-1

    UniProtKB/TrEMBL
    A0A6I8UYX3
    Related
    XP_033240986.1, XM_033385095.1
    Conserved Domains (3) summary
    smart00647
    Location:204 → 264
    IBR; In Between Ring fingers
    cd16626
    Location:132 → 189
    RING-HC_RBR_HHARI; RING finger, HC subclass, found in human homolog of Drosophila ariadne (HHARI) and similar proteins
    pfam01485
    Location:286 → 326
    IBR; IBR domain, a half RING-finger domain

  2. XM_002133664.4 → XP_002133700.4  potential E3 ubiquitin-protein ligase ariadne-1

    UniProtKB/TrEMBL
    A0A6I8UYX3
    Related
    XP_002133700.4, XM_002133664.4
    Conserved Domains (3) summary
    smart00647
    Location:204 → 264
    IBR; In Between Ring fingers
    cd16626
    Location:132 → 189
    RING-HC_RBR_HHARI; RING finger, HC subclass, found in human homolog of Drosophila ariadne (HHARI) and similar proteins
    pfam01485
    Location:286 → 326
    IBR; IBR domain, a half RING-finger domain

  3. XM_033385096.1 → XP_033240987.1  potential E3 ubiquitin-protein ligase ariadne-1

    UniProtKB/TrEMBL
    A0A6I8UYX3
    Related
    XP_033240987.1, XM_033385096.1
    Conserved Domains (3) summary
    smart00647
    Location:204 → 264
    IBR; In Between Ring fingers
    cd16626
    Location:132 → 189
    RING-HC_RBR_HHARI; RING finger, HC subclass, found in human homolog of Drosophila ariadne (HHARI) and similar proteins
    pfam01485
    Location:286 → 326
    IBR; IBR domain, a half RING-finger domain
Nucleotide Protein Strain
Heading Accession and Version

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