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Caper RNA-binding protein 39-like protein Caper [ Drosophila simulans ]

Gene ID: 6731311, updated on 15-May-2024

Summary

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Gene symbol
Caper
Gene description
RNA-binding protein 39-like protein Caper
Locus tag
Dsimw501_GD23448
See related
EnsemblRapid:LOC6731311
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila simulans
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GD23448; GD23448-PB
Orthologs
fruit fly all
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Genomic context

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See Caper in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
7
Annotation release Status Assembly Chr Location
103 current Prin_Dsim_3.1 (GCF_016746395.2) 2L NC_052520.2 (6990947..6995983)
102 previous assembly Prin_Dsim_3.0 (GCF_016746395.1) 2L NC_052520.1 (6990941..6995977)

Chromosome 2L - NC_052520.2Genomic Context describing neighboring genes Neighboring gene Mitochondrial Magnesium Exporter 1 Neighboring gene RAS oncogene family member Rab30 Neighboring gene trafficking kinesin-binding protein milt Neighboring gene uncharacterized LOC123327375 Neighboring gene menin Neighboring gene Male specific transcript 27D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 39
Names
Dsim\GD23448
Dsim\GD23448-PB
dsim_GLEANR_7185

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila simulans Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Prin_Dsim_3.1

Genomic

  1. NC_052520.2 Reference Prin_Dsim_3.1

    Range
    6990947..6995983
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039295572.1 → XP_039151506.1  RNA-binding protein 39

    UniProtKB/TrEMBL
    A0A0J9THM1
    Related
    XP_039151506.1, XM_039295572.1
    Conserved Domains (1) summary
    TIGR01622
    Location:210 → 580
    SF-CC1; splicing factor, CC1-like family

RNA

  1. XR_005544300.2 RNA Sequence

    Related
    XR_005544300.2

  2. XR_005544302.2 RNA Sequence

    Related
    XR_005544302.2

  3. XR_005544301.2 RNA Sequence

    Related
    XR_005544301.2
Nucleotide Protein Strain
Heading Accession and Version

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