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cic Putative transcription factor capicua [ Drosophila willistoni ]

Gene ID: 6647448, updated on 6-Jun-2024

Summary

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Gene symbol
cic
Gene description
Putative transcription factor capicua
Locus tag
Dwil_GK10919
See related
EnsemblRapid:LOC6647448
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila willistoni
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GK10919; GK10919-PB
Orthologs
fruit fly all
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Genomic context

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See cic in Genome Data Viewer
Location:
chromosome: 3R
Exon count:
19
Annotation release Status Assembly Chr Location
102 current UCI_dwil_1.1 (GCF_018902025.1) 3R NC_061086.1 (18416917..18459992)
101 previous assembly dwil_caf1 (GCF_000005925.1) Unplaced Scaffold NW_002032853.1 (10717843..10761038, complement)

Chromosome 3R - NC_061086.1Genomic Context describing neighboring genes Neighboring gene protein O-GlcNAcase Neighboring gene ATP synthase subunit C lysine N-methyltransferase Neighboring gene vasotab Neighboring gene Iron-sulfur cluster assembly enzyme Neighboring gene uncharacterized LOC124462106 Neighboring gene uncharacterized LOC6647287 Neighboring gene uncharacterized LOC6647286

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative transcription factor capicua
Names
Dwil\GK10919
Dwil\GK10919-PB
dwil_GLEANR_11176

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila willistoni Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCI_dwil_1.1

Genomic

  1. NC_061086.1 Reference UCI_dwil_1.1

    Range
    18416917..18459992
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023178801.2 → XP_023034569.1  putative transcription factor capicua isoform X2

    Related
    XP_023034569.1, XM_023178801.2
    Conserved Domains (2) summary
    cd01388
    Location:1304 → 1375
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam16090
    Location:386 → 468
    DUF4819; Domain of unknown function (DUF4819)

  2. XM_023178799.2 → XP_023034567.1  putative transcription factor capicua isoform X1

    Related
    XP_023034567.1, XM_023178799.2
    Conserved Domains (2) summary
    cd01388
    Location:1304 → 1375
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam16090
    Location:386 → 468
    DUF4819; Domain of unknown function (DUF4819)

  3. XM_047013491.1 → XP_046869447.1  putative transcription factor capicua isoform X3

    UniProtKB/TrEMBL
    B4N9G4
    Related
    XP_046869447.1, XM_047013491.1
Nucleotide Protein
Heading Accession and Version

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