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trbd trabid [ Tribolium castaneum (red flour beetle) ]

Gene ID: 663735, updated on 10-May-2024

Summary

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Gene symbol
trbd
Gene description
trabid
Locus tag
TcasGA2_TC011759
Gene type
protein coding
RefSeq status
MODEL
Organism
Tribolium castaneum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
Orthologs
fruit fly all
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Genomic context

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See trbd in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 2 NC_087395.1 (24404596..24412117, complement)
103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG9 NC_007424.3 (13893415..13900913, complement)

Chromosome 2 - NC_087395.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135265377 Neighboring gene Sid-1-related A Neighboring gene uncharacterized LOC135265468 Neighboring gene Chitinase 10 Neighboring gene Nucleolar protein 14 homolog l(3)07882 Neighboring gene E3 ubiquitin-protein ligase MARCH5 Neighboring gene 2-aminoethanethiol dioxygenase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
  2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables K63-linked polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K29-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K33-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein deubiquitination involved in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin thioesterase trabid
Names
AUGUSTUS-3.0.2_11759
GLEAN_11759
Ubiquitin thioesterase trabid-like Protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icTriCast1.1 Primary Assembly

Genomic

  1. NC_087395.1 Reference icTriCast1.1 Primary Assembly

    Range
    24404596..24412117 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008200088.3 → XP_008198310.1  ubiquitin thioesterase trabid

    See identical proteins and their annotated locations for XP_008198310.1

    UniProtKB/TrEMBL
    D6WZW4
    Conserved Domains (3) summary
    smart00547
    Location:130 → 154
    ZnF_RBZ; Zinc finger domain
    sd00029
    Location:8 → 27
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam02338
    Location:383 → 529
    OTU; OTU-like cysteine protease

  2. XM_008200087.3 → XP_008198309.1  ubiquitin thioesterase trabid

    See identical proteins and their annotated locations for XP_008198309.1

    UniProtKB/TrEMBL
    D6WZW4
    Conserved Domains (3) summary
    smart00547
    Location:130 → 154
    ZnF_RBZ; Zinc finger domain
    sd00029
    Location:8 → 27
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam02338
    Location:383 → 529
    OTU; OTU-like cysteine protease

  3. XM_969770.5 → XP_974863.1  ubiquitin thioesterase trabid

    See identical proteins and their annotated locations for XP_974863.1

    UniProtKB/TrEMBL
    D6WZW4
    Conserved Domains (3) summary
    smart00547
    Location:130 → 154
    ZnF_RBZ; Zinc finger domain
    sd00029
    Location:8 → 27
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam02338
    Location:383 → 529
    OTU; OTU-like cysteine protease
Nucleotide Protein Strain
Heading Accession and Version

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